Systems biology

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Systems biology

LE WE PMID CA

Systems biology

2667

Systembiologie

Bioinformatics

Data base (Medicine Biology Pharmacology)

Genetics (Methods)

Graph theoretical concepts

Hemopoiesis (BASKET)

Metabolomics

Methods of biochemical experimentation

Network medicine

Ontology

Plastid

Protein (protein binding)

Proteomics

Protists

Semantic Web

Signal transduction

Simulation of biological processes (Bioinformatics)

Synthetic biology

Systems biology

Text mining

2008 1	Can systems biology understand pathway activation? Gene expression signatures as surrogate markers for understanding the complexity of pathway activation. [19517027] Curr Genomics 9(5): 349-60 (2008)
2007 2	Resources, standards and tools for systems biology. [17942476] Brief Funct Genomic Proteomic 6(3): 240-51 (2007)
2007 3	Computational systems biology in cancer: modeling methods and applications. [19936081] Gene Regul Syst Bio 1(-): 91-110 (2007)
2008 4	Systems biology-What's in a name? [18541925] Am J Physiol Cell Physiol 294(6): C1299 (2008)
2004 5	Primer on medical genomics. Part XIV: Introduction to systems biology--a new approach to understanding disease and treatment. [15132407] Mayo Clin Proc 79(5): 651-8 (2004)
2011 6	Systems biology in immunology: a computational modeling perspective. [21219182] Annu Rev Immunol 29(-): 527-85 (2011)
2011 7	Systems biology applied to vaccine and immunotherapy development. [21933421] BMC Syst Biol 5(-): 146 (2011)
2011 8	Computational systems biology: integration of sequence, structure, network, and dynamics. [21689468] BMC Syst Biol 5 Suppl 1(-): S1 (2011)
2010 9	Which metabolic pathways generate and characterize the flux space? A comparison among elementary modes, extreme pathways and minimal generators. [20467567] J Biomed Biotechnol 2010(-): 753904 (2010)
2010 10	Rewiring and regulation of cross-compartmentalized metabolism in protists. [20124348] Philos Trans R Soc Lond B Biol Sci 365(1541): 831-45 (2010)
2010 11	Biophysics and systems biology. [20123750] Philos Transact A Math Phys Eng Sci 368(1914): 1125-39 (2010)
2010 12	Hematopoiesis and its disorders: a systems biology approach. [20103779] Blood 115(12): 2339-47 (2010)
2008 13	Mathematical models in mammalian cell biology. [18638360] Genome Biol 9(7): 316 (2008)
2010 14	Towards a rigorous assessment of systems biology models: the DREAM3 challenges. [20186320] PLoS One 5(2): e9202 (2010)
2009 15	Dynamic proteomics in modeling of the living cell. Protein-protein interactions. [20210711] Biochemistry (Mosc) 74(13): 1586-607 (2009)
2005 16	Multiscale modeling of cardiac cellular energetics. [16093514] Ann N Y Acad Sci 1047(-): 395-424 (2005)
2010 17	What is systems biology? [20143938] Future Microbiol 5(2): 139-41 (2010)
2006 18	Graph-based methods for analysing networks in cell biology. [16880171] Brief Bioinform 7(3): 243-55 (2006)
2006 19	Representing, storing and accessing molecular interaction data: a review of models and tools. [17132622] Brief Bioinform 7(4): 331-8 (2006)
2006 20	Understanding the computational methodologies of systems biology. [17132621] Brief Bioinform 7(4): 315-7 (2006)
2006 21	Application of wavelet-based tools to study the dynamics of biological processes. [17118945] Brief Bioinform 7(4): 375-89 (2006)
2006 22	Computational methodologies for modelling, analysis and simulation of signalling networks. [17116646] Brief Bioinform 7(4): 339-53 (2006)
2006 23	Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments. [17107967] Brief Bioinform 7(4): 364-74 (2006)
2006 24	Resources for integrative systems biology: from data through databases to networks and dynamic system models. [17040977] Brief Bioinform 7(4): 318-30 (2006)
2006 25	Mining literature for systems biology. [17032698] Brief Bioinform 7(4): 399-406 (2006)
2006 26	Strategies for dealing with incomplete information in the modeling of molecular interaction networks. [17003073] Brief Bioinform 7(4): 354-63 (2006)
2006 27	Advanced computing for systems biology. [17000735] Brief Bioinform 7(4): 390-8 (2006)
2010 28	SynBioSS designer: a web-based tool for the automated generation of kinetic models for synthetic biological constructs. [20639523] Brief Bioinform 11(4): 394-402 (2010)
2007 29	Protein interactions and disease: computational approaches to uncover the etiology of diseases. [17638813] Brief Bioinform 8(5): 333-46 (2007)
2007 30	Current progress in network research: toward reference networks for key model organisms. [17728341] Brief Bioinform 8(5): 318-32 (2007)
2007 31	Partial least squares: a versatile tool for the analysis of high-dimensional genomic data. [16772269] Brief Bioinform 8(1): 32-44 (2007)
2008 32	Building a knowledge base for systems pathology. [19073714] Brief Bioinform 9(6): 518-31 (2008)
2007 33	Graphs in molecular biology. [17903289] BMC Bioinformatics 8 Suppl 6(-): S8 (2007)
2009 34	Intelligently deciphering unintelligible designs: algorithmic algebraic model checking in systems biology. [19364723] J R Soc Interface 6(36): 575-97 (2009)
2007 35	Tools for visually exploring biological networks. [17720984] Bioinformatics 23(20): 2651-9 (2007)
2011 36	Whole genome network analysis of ion channels and connexins in myocardial infarction. [21471719] Cell Physiol Biochem 27(3-4): 299-304 (2011)
2010 37	Construction and analysis of protein-protein interaction networks. [20334628] Autom Exp 2(1): 2 (2010)
2011 38	Network medicine: a network-based approach to human disease. [21164525] Nat Rev Genet 12(1): 56-68 (2011)
2008 39	From proteomics toward systems biology: integration of different types of proteomics data into network models. [18377721] BMB Rep 41(3): 184-93 (2008)
2008 40	What is systems biology? [18621799] Brief Funct Genomic Proteomic 7(4): 237-8 (2008)
2008 41	A review on models and algorithms for motif discovery in protein-protein interaction networks. [18443014] Brief Funct Genomic Proteomic 7(2): 147-56 (2008)
2009 42	Reconstruction of biochemical networks in microorganisms. [19116616] Nat Rev Microbiol 7(2): 129-43 (2009)
2011 43	Tools used to study how protein complexes are assembled in signaling cascades. [22002082] Bioeng Bugs 2(5): 247-59 (2011)
2011 44	Structural analysis of hubs in human NR-RTK network. [21974810] Biol Direct 6(-): 49 (2011)
2008 45	Standards and ontologies in computational systems biology. [18793134] Essays Biochem 45(-): 211-22 (2008)
2007 46	Systems developmental biology: the use of ontologies in annotating models and in identifying gene function within and across species. [17566825] Mamm Genome 18(6-7): 402-11 (2007)
2010 47	Computational approaches for detecting protein complexes from protein interaction networks: a survey. [20158874] BMC Genomics 11 Suppl 1(-): S3 (2010)
2007 48	Computational identification of cellular networks and pathways. [17579773] Mol Biosyst 3(7): 478-82 (2007)
2011 49	Interactomes, manufacturomes and relational biology: analogies between systems biology and manufacturing systems. [21689427] Theor Biol Med Model 8(-): 19 (2011)
2011 50	Review and application of group theory to molecular systems biology. [21696623] Theor Biol Med Model 8(-): 21 (2011)
2010 51	Computational modeling of mammalian signaling networks. [20836022] Wiley Interdiscip Rev Syst Biol Med 2(2): 194-209 (2010)
2010 52	Recent advances in clustering methods for protein interaction networks. [21143777] BMC Genomics 11 Suppl 3(): S10 (2010)
2011 53	Simulation of cellular biochemical system kinetics. [21171044] Wiley Interdiscip Rev Syst Biol Med 3(2): 136-46 (2011)

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