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10.1038/nmeth.4560

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C6029251!6029251!29334377
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suck abstract from ncbi


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pmid29334377      Nat+Methods 2018 ; 15 (2): 119-22
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  • Detecting hierarchical genome folding with network modularity #MMPMID29334377
  • Norton HK; Emerson DJ; Huang H; Kim J; Titus KR; Gu S; Bassett DS; Phillips-Cremins JE
  • Nat Methods 2018[Feb]; 15 (2): 119-22 PMID29334377show ga
  • Mammalian genomes are folded in a hierarchy of compartments, topologically associating domains (TADs), subTADs and looping interactions. Here, we describe 3DNetMod, a graph theory-based method for sensitive and accurate detection of chromatin domains across length scales in Hi-C data. We identify nested, partially overlapping TADs and subTADs genome wide by optimizing network modularity and varying a single resolution parameter. 3DNetMod can be applied broadly to understand genome reconfiguration in development and disease.
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