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10.1038/nbt.3968

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C5953555!5953555!28922346
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suck abstract from ncbi


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pmid28922346      Nat+Biotechnol 2017 ; 35 (10): 940-50
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  • GRID-seq reveals the global RNA-chromatin interactome #MMPMID28922346
  • Li X; Zhou B; Chen L; Gou LT; Li H; Fu XD
  • Nat Biotechnol 2017[Oct]; 35 (10): 940-50 PMID28922346show ga
  • Higher eukaryotic genomes are bound by a large number of coding and non-coding RNAs, but approaches to comprehensively map the identity and binding sites of these RNAs are lacking. Here we report a method to in situ capture global RNA interactions with DNA by deep sequencing (GRID-seq), which enables the comprehensive identification of the entire repertoire of chromatin-interacting RNAs and their respective binding sites. In human, mouse and Drosophila cells, we detected a large set of tissue-specific coding and non-coding RNAs that are bound to active promoters and enhancers, especially super-enhancers. Assuming that most mRNA-chromatin interactions indicate the physical proximity of a promoter and an enhancer, we constructed a three-dimensional global connectivity map of promoters and enhancers, revealing transcription activity-linked genomic interactions in the nucleus.
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