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10.1093/nar/gkv784 http://scihub22266oqcxt.onion/10.1093/nar/gkv784 C4652774!4652774!26250111     free     free     free Deprecated: Implicit conversion from float 219.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 219.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Warning: imagejpeg(C:\Inetpub\vhosts\kidney.de\httpdocs\phplern\26250111.jpg): Failed to open stream: No such file or directory in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 117       Nucleic+Acids+Res 2015 ; 43 (16): 7762-8 Nephropedia Template TP {{tp|p=26250111|t=2015. High speed BLASTN: an accelerated MegaBLAST search tool |pdf=|usr=}}{{26250111}} gab.com Text High speed BLASTN: an accelerated MegaBLAST search tool JO: Nucleic Acids Res http://www.kidney.de/pget.php?&tw=1&pmid=26250111 #FOAvip Sequence alignment is a long standing problem in bioinformatics. The Basic Local Alignment Search Tool (BLAST) is one of the most popular and fundamental alignment tools. The explosive growth of biological sequences calls for speedup of sequence alignment tools such as BLAST. To this end, we develop high speed BLASTN (HS-BLASTN), a parallel and fast nucleotide database search tool that accelerates MegaBLAST?the default module of NCBI-BLASTN. HS-BLASTN builds a new lookup table using the FMD-index of the database and employs an accurate and effective seeding method to find short stretches of identities (called seeds) between the query and the database. HS-BLASTN produces the same alignment results as MegaBLAST and its computational speed is much faster than MegaBLAST. Specifically, our experiments conducted on a 12-core server show that HS-BLASTN can be 22 times faster than MegaBLAST and exhibits better parallel performance than MegaBLAST. HS-BLASTN is written in C++ and the related source code is available at https://github.com/chenying2016/queries under the GPLv3 license. Twit Text FOAVip High speed BLASTN: an accelerated MegaBLAST search tool ????Nucleic Acids Res http://www.kidney.de/pget.php?&tw=1&pmid=26250111 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=26250111 #FOAvip English Wikipedia <ref>{{Cite pmid|26250111}}</ref> High speed BLASTN: an accelerated MegaBLAST search tool #MMPMID26250111 Chen Y; Ye W; Zhang Y; Xu Y Nucleic Acids Res 2015[Sep]; 43 (16): 7762-8 PMID26250111show ga Sequence alignment is a long standing problem in bioinformatics. The Basic Local Alignment Search Tool (BLAST) is one of the most popular and fundamental alignment tools. The explosive growth of biological sequences calls for speedup of sequence alignment tools such as BLAST. To this end, we develop high speed BLASTN (HS-BLASTN), a parallel and fast nucleotide database search tool that accelerates MegaBLAST?the default module of NCBI-BLASTN. HS-BLASTN builds a new lookup table using the FMD-index of the database and employs an accurate and effective seeding method to find short stretches of identities (called seeds) between the query and the database. HS-BLASTN produces the same alignment results as MegaBLAST and its computational speed is much faster than MegaBLAST. Specifically, our experiments conducted on a 12-core server show that HS-BLASTN can be 22 times faster than MegaBLAST and exhibits better parallel performance than MegaBLAST. HS-BLASTN is written in C++ and the related source code is available at https://github.com/chenying2016/queries under the GPLv3 license. äHigh speed BLASTN: an accelerated MegaBLAST search tool (epmc).pdf DeepDyve Pubget Overpricing