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10.1038/s41598-017-06200-4 http://scihub22266oqcxt.onion/10.1038/s41598-017-06200-4 C5516038!5516038!28720872     free     free     free Warning: file_get_contents(https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=28720872&cmd=llinks): Failed to open stream: HTTP request failed! 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Associating transcription factors and conserved RNA structures with gene regulation in the human brain |pdf=|usr=}}{{28720872}} gab.com Text Associating transcription factors and conserved RNA structures with gene regulation in the human brain JO: Sci Rep http://www.kidney.de/pget.php?&tw=1&pmid=28720872 #FOAvip Anatomical subdivisions of the human brain can be associated with different neuronal functions. This functional diversification is reflected by differences in gene expression. By analyzing post-mortem gene expression data from the Allen Brain Atlas, we investigated the impact of transcription factors (TF) and RNA secondary structures on the regulation of gene expression in the human brain. First, we modeled the expression of a gene as a linear combination of the expression of TFs. We devised an approach to select robust TF-gene interactions and to determine localized contributions to gene expression of TFs. Among the TFs with the most localized contributions, we identified EZH2 in the cerebellum, NR3C1 in the cerebral cortex and SRF in the basal forebrain. Our results suggest that EZH2 is involved in regulating ZIC2 and SHANK1 which have been linked to neurological diseases such as autism spectrum disorder. Second, we associated enriched regulatory elements inside differentially expressed mRNAs with RNA secondary structure motifs. We found a group of purine-uracil repeat RNA secondary structure motifs plus other motifs in neuron related genes such as ACSL4 and ERLIN2. Twit Text FOAVip Associating transcription factors and conserved RNA structures with gene regulation in the human brain ????Sci Rep http://www.kidney.de/pget.php?&tw=1&pmid=28720872 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=28720872 #FOAvip English Wikipedia <ref>{{Cite pmid|28720872}}</ref> Associating transcription factors and conserved RNA structures with gene regulation in the human brain #MMPMID28720872 Hecker N; Seemann SE; Silahtaroglu A; Ruzzo WL; Gorodkin J Sci Rep 2017[]; 7 (�): � PMID28720872show ga Anatomical subdivisions of the human brain can be associated with different neuronal functions. This functional diversification is reflected by differences in gene expression. By analyzing post-mortem gene expression data from the Allen Brain Atlas, we investigated the impact of transcription factors (TF) and RNA secondary structures on the regulation of gene expression in the human brain. First, we modeled the expression of a gene as a linear combination of the expression of TFs. We devised an approach to select robust TF-gene interactions and to determine localized contributions to gene expression of TFs. Among the TFs with the most localized contributions, we identified EZH2 in the cerebellum, NR3C1 in the cerebral cortex and SRF in the basal forebrain. Our results suggest that EZH2 is involved in regulating ZIC2 and SHANK1 which have been linked to neurological diseases such as autism spectrum disorder. Second, we associated enriched regulatory elements inside differentially expressed mRNAs with RNA secondary structure motifs. We found a group of purine-uracil repeat RNA secondary structure motifs plus other motifs in neuron related genes such as ACSL4 and ERLIN2. �Associating transcription factors and conserved RNA structures with ge(epmc).pdf DeepDyve Pubget Overpricing